OCA Atlas for 1ONV

1ONV

Transcription

date

Mar 02, 2003

title

Nmr Structure Of A Complex Containing The Tfiif Subunit Rap7 Rnap II Ctd Phosphatase Fcp1

authors

B.D.Nguyen, K.L.Abbott, K.Potempa, M.S.Kobor, J.Archambault, J.Gr P.Legault, J.G.Omichinski

compound

source

Molecule: Transcription Initiation Factor Iif, Alpha Subuni
Chain: A
Fragment: C-Terminal Domain Of Rap74, Sequence Database Res 517;
Synonym: Tfiif-Alfa, Transcription Initiation Factor Rap74
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pgex
Expression_system_plasmid: Gst-2t

Molecule: Serine Phosphatase Fcp1a
Chain: B
Fragment: C-Terminal Domain Of Fcp1, Sequence Database Resi 842;
Engineered: Yes

method

Solution NMR

related structures

by homologous chain: 1J2X, 1NHA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

NMR structure of a complex containing the TFIIF subunit RAP74 and the RNA polymerase II carboxyl-terminal domain phosphatase FCP1., Nguyen BD, Abbott KL, Potempa K, Kobor MS, Archambault J, Greenblatt J, Legault P, Omichinski JG, Proc Natl Acad Sci U S A 2003 May 13;100(10):5688-93. PMID:12732728

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (483 Kb) [Save to disk]

Biological Unit Coordinates (1onv.pdb1.gz) 24 Kb

CSU: Contacts of Structural Units for 1ONV

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1ONV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1ONV from S2C, [Save to disk]

View 1ONV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ONV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1ONV, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1onva_, region A [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1onv_B] [1onv] [1onv_A]

SWISS-PROT database: [Q9Y5B0] [P35269]

Domain organization of [CTDP1_HUMAN] [T2FA_HUMAN] by SWISSPFAM

Other resources with information on 1ONV

Community annotation for 1ONV at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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