1OSX Immune System date Mar 20, 2003
title Solution Structure Of The Extracellular Domain Of Blys Recep (Br3)
authors N.C.Gordon, B.Pan, S.G.Hymowitz, J.P.Yin, R.F.Kelley, A.G.Cochran V.M.Dixit, W.J.Fairbrother, M.A.Starovasnik
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Extracellular Domain
Synonym: B Cell- Activating Factor Receptor, Baff Receptor, Blys Receptor 3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnfrsf13c Or Baffr Or Br3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBAFF/BLyS receptor 3 comprises a minimal TNF receptor-like module that encodes a highly focused ligand-binding site., Gordon NC, Pan B, Hymowitz SG, Yin J, Kelley RF, Cochran AG, Yan M, Dixit VM, Fairbrother WJ, Starovasnik MA, Biochemistry 2003 May 27;42(20):5977-83. PMID:12755599
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1osx.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1OSX
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OSX from S2C, [Save to disk]
  • View 1OSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OSX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OSX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1osxa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1osx_A] [1osx]
  • SWISS-PROT database: [Q96RJ3]
  • Domain organization of [TR13C_HUMAN] by SWISSPFAM
  • Other resources with information on 1OSX
  • Community annotation for 1OSX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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