1OZN	Signaling Protein	date	Apr 09, 2003
title	1.5a Crystal Structure Of The Nogo Receptor Ligand Binding D Reveals A Convergent Recognition Scaffold Mediating Inhibit Myelination
authors	X.He, J.F.Bazan, J.B.Park, G.Mcdermott, Z.He, K.C.Garcia
compound		source
Molecule: Reticulon 4 Receptor Chain: A Fragment: Ligand Binding Domain Synonym: Nogo Receptor, Ngr, Nogo-66 Receptor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rtn4r Or Nogor Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_strain: Hi5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacgp67a
symmetry	Space Group: P 1	R_factor 0.167 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.206 33.915 60.221 85.02 75.91 67.96
method	X-Ray Diffraction	resolution	1.52 Å
ligand	ACY, BMA, MAN, NAG, NDG	enzyme
Primary reference	Structure of the nogo receptor ectodomain. A recognition module implicated in myelin inhibition., He XL, Bazan JF, McDermott G, Park JB, Wang K, Tessier-Lavigne M, He Z, Garcia KC, Neuron 2003 Apr 24;38(2):177-85. PMID:12718853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1ozn.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 1OZN CSU: Contacts of Structural Units for 1OZN Likely Quarternary Molecular Structure file(s) for 1OZN Retrieve 1OZN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OZN from S2C, [Save to disk]

View 1OZN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OZN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OZN, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ozna_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ozn] [1ozn_A] SWISS-PROT database: [Q9BZR6] Domain organization of [RTN4R_HUMAN] by SWISSPFAM Domains found in 1OZN: [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART

Other resources with information on 1OZN

Community annotation for 1OZN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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