1P1T Rna Binding Protein date Apr 14, 2003
title Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage Stimu Factor 64 Kda Subunit
authors J.M.Perez-Canadillas, G.Varani
compound source
Molecule: Cleavage Stimulation Factor, 64 Kda Subunit
Chain: A
Fragment: N-Terminal Rrm Of Cstf-64
Synonym: Cstf 64 Kda Subunit, Cf-1 64 Kda Subunit
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cstf2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRecognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein., Perez Canadillas JM, Varani G, EMBO J 2003 Jun 2;22(11):2821-30. PMID:12773396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • Biological Unit Coordinates (1p1t.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1P1T
  • Original NMR restraints for 1P1T from PDB
  • Retrieve 1P1T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P1T from S2C, [Save to disk]
    • View 1P1T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P1T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P1T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p1ta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p1t] [1p1t_A]
  • SWISS-PROT database: [P33240]
  • Domain organization of [CSTF2_HUMAN] by SWISSPFAM
  • Domain found in 1P1T: [RRM ] by SMART
    • Other resources with information on 1P1T
  • Community annotation for 1P1T at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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