1P3C Hydrolase date Apr 17, 2003
title Glutamyl Endopeptidase From Bacillus Intermedius
authors R.Meijers, E.V.Blagova, V.M.Levdikov, G.N.Rudenskaya, G.G.Chestu T.V.Akimkina, S.V.Kostrov, V.S.Lamzin, I.P.Kuranova
compound source
Molecule: Glutamyl-Endopeptidase
Chain: A
Organism_scientific: Bacillus Intermedius
Organism_taxid: 1400
Strain: 3-19
symmetry Space Group: C 2 2 21
R_factor 0.153 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.494 85.437 82.147 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
related structures by homologous chain: 1P3E
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of glutamyl endopeptidase from Bacillus intermedius reveals a structural link between zymogen activation and charge compensation., Meijers R, Blagova EV, Levdikov VM, Rudenskaya GN, Chestukhina GG, Akimkina TV, Kostrov SV, Lamzin VS, Kuranova IP, Biochemistry 2004 Mar 16;43(10):2784-91. PMID:15005613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1p3c.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1P3C
  • Likely Quarternary Molecular Structure file(s) for 1P3C
  • Structure Factors (241 Kb)
  • Retrieve 1P3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P3C from S2C, [Save to disk]
  • Re-refined 1p3c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P3C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1P3C from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P3C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p3ca_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p3c] [1p3c_A]
  • SWISS-PROT database: [Q9EXR9]
  • Domain organization of [Q9EXR9_BACIN] by SWISSPFAM
  • Domain found in 1P3C: [Tryp_SPc ] by SMART
  • Other resources with information on 1P3C
  • Community annotation for 1P3C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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