1P3V Oxidoreductase date Apr 18, 2003
title Crystal Structures Of The No-And Co-Bound Heme Oxygenase Fro Neisseria Meningitidis: Implications For Oxygen Activation
authors J.Friedman, L.Lad, R.Deshmukh, H.Li, A.Wilks, T.L.Poulos
compound source
Molecule: Heme Oxygenase 1
Chain: A
Synonym: Ho-1; Heme Oxygenase (Decyclizing) 1
Ec: 1.14.99.3
Engineered: Yes
Other_details: Heme-Complexed
Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
Gene: Hemo
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pwmz1651
symmetry Space Group: P 43 21 2
R_factor 0.249 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.449 60.449 102.361 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand CMO, HEM enzyme Oxidoreductase E.C.1.14.99.3 BRENDA
related structures by homologous chain: 1P3T
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the NO- and CO-bound heme oxygenase from Neisseriae meningitidis. Implications for O2 activation., Friedman J, Lad L, Deshmukh R, Li H, Wilks A, Poulos TL, J Biol Chem 2003 Sep 5;278(36):34654-9. Epub 2003 Jun 22. PMID:12819228
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1p3v.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1P3V
  • CSU: Contacts of Structural Units for 1P3V
  • Likely Quarternary Molecular Structure file(s) for 1P3V
  • Retrieve 1P3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P3V from S2C, [Save to disk]
  • View 1P3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P3V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P3V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p3va_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p3v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p3v_A] [1p3v]
  • SWISS-PROT database: [Q9RGD9]
  • Domain organization of [Q9RGD9_NEIME] by SWISSPFAM
  • Other resources with information on 1P3V
  • Community annotation for 1P3V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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