1P4W Dna Binding Protein date Apr 24, 2003
title Solution Structure Of The Dna-Binding Domain Of The Erwinia Rcsb Protein
authors P.Pristovsek, K.Sengupta, F.Loehr, B.Schaefer, M.Wehland Von Tre H.Rueterjans, F.Bernhard
compound source
Molecule: Rcsb
Chain: A
Fragment: C-Terminal Domain (Residues 129-215)
Engineered: Yes
Organism_scientific: Erwinia Amylovora
Organism_taxid: 552
Gene: Rscb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pq-Crcsbea
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of the DNA-binding domain of the Erwinia amylovora RcsB protein and its interaction with the RcsAB box., Pristovsek P, Sengupta K, Lohr F, Schafer B, von Trebra MW, Ruterjans H, Bernhard F, J Biol Chem 2003 May 16;278(20):17752-9. PMID:12740396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (469 Kb) [Save to disk]
  • Biological Unit Coordinates (1p4w.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1P4W
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1P4W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P4W from S2C, [Save to disk]
  • View 1P4W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P4W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P4W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p4wa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p4w] [1p4w_A]
  • SWISS-PROT database: [P96320]
  • Domain organization of [P96320_ERWAM] by SWISSPFAM
  • Domain found in 1P4W: [HTH_LUXR ] by SMART
  • Other resources with information on 1P4W
  • Community annotation for 1P4W at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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