1P5W	Virus Dna	date	Apr 28, 2003
title	The Structures Of Host Range Controlling Regions Of The Caps Canine And Feline Parvoviruses And Mutants
authors	M.Agbandje-Mckenna, L.Govindasamy
compound		source
Molecule: 5'-D(P(3dr)Ptpapcpcptpcptptpgpc)-3' Chain: B Engineered: Yes		Synthetic: Yes
Molecule: Coat Protein Vp2 Chain: A Fragment: Sequence Database Residues 190-737 Engineered: Yes Mutation: Yes		Organism_scientific: Canine Parvovirus Organism_taxid: 10788 Expression_system: Felis Catus Expression_system_common: Domestic Cat Expression_system_taxid: 9685 Expression_system_cell_line: Nlfk Nordisk Laboratory Feline
symmetry	Space Group: P 21 21 21	R_factor 0.200 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 372.417 373.017 377.083 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	3DR, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants., Govindasamy L, Hueffer K, Parrish CR, Agbandje-McKenna M, J Virol 2003 Nov;77(22):12211-21. PMID:14581558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (1p5w.pdb1.gz) 5462 Kb LPC: Ligand-Protein Contacts for 1P5W CSU: Contacts of Structural Units for 1P5W Likely Quarternary Molecular Structure file(s) for 1P5W Retrieve 1P5W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P5W from S2C, [Save to disk]

View 1P5W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P5W

VIPERdb: visual, structural and computational analysis of 1P5W Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P5W, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5wa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5w_B] [1p5w_A] [1p5w] SWISS-PROT database: [P17455] Domain organization of [COAT_PAVCD] by SWISSPFAM

Other resources with information on 1P5W

Community annotation for 1P5W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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