1P5Y	Virus	date	Apr 28, 2003
title	The Structures Of Host Range Controlling Regions Of The Caps Canine And Feline Parvoviruses And Mutants
authors	M.Agbandje-Mckenna, L.Govindasamy
compound		source
Molecule: Coat Protein Vp2 Chain: A Fragment: Sequence Database Residues 190-737 Engineered: Yes Mutation: Yes		Organism_scientific: Canine Parvovirus Organism_taxid: 10788 Expression_system_common: Feline Expression_system_cell_line: Nlfk Nordisk Laboratory Feline
symmetry	Space Group: C 1 2 1	R_factor 0.252 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 440.450 246.810 443.650 90.00 93.54 90.00
method	X-Ray Diffraction	resolution	3.20 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of host range-controlling regions of the capsids of canine and feline parvoviruses and mutants., Govindasamy L, Hueffer K, Parrish CR, Agbandje-McKenna M, J Virol 2003 Nov;77(22):12211-21. PMID:14581558

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (1p5y.pdb1.gz) 5173 Kb CSU: Contacts of Structural Units for 1P5Y Likely Quarternary Molecular Structure file(s) for 1P5Y Retrieve 1P5Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1P5Y from S2C, [Save to disk]

View 1P5Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1P5Y

VIPERdb: visual, structural and computational analysis of 1P5Y Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1P5Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1p5ya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5y_A] [1p5y] SWISS-PROT database: [P30129] Domain organization of [COAT_PAVC2] by SWISSPFAM

Other resources with information on 1P5Y

Community annotation for 1P5Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---