1P7A Solution Structure of the Third Zinc Finger from BKLF date
authors Simpson, R.J.Y., Cram, E.D., Czolij, R., Matthews, J.M., Crossley, M., Mackay, J.P.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand ZN enzyme
related structures by homologous chain: 1F2I
Primary referenceCCHX zinc finger derivatives retain the ability to bind Zn(II) and mediate protein-DNA interactions., Simpson RJ, Cram ED, Czolij R, Matthews JM, Crossley M, Mackay JP, J Biol Chem 2003 Jul 25;278(30):28011-8. PMID:12736264
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (197 Kb) [Save to disk]
  • Biological Unit Coordinates (1p7a.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1P7A
  • CSU: Contacts of Structural Units for 1P7A
  • Original NMR restraints for 1P7A from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1P7A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P7A from S2C, [Save to disk]
    • View 1P7A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P7A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P7A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p7aa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p7a from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p7a_A] [1p7a]
  • SWISS-PROT database: [Q60980]
  • Domain organization of [KLF3_MOUSE] by SWISSPFAM
  • Domain found in 1P7A: [ZnF_C2H2 ] by SMART
    • Other resources with information on 1P7A
  • Community annotation for 1P7A at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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