1PF8	Transferase	date	May 24, 2003
title	Crystal Structure Of Human Cyclin-Dependent Kinase 2 Complex Nucleoside Inhibitor
authors	D.J.Moshinsky, R.C.Bellamacina, D.C.Boisvert, P.Huang, T.Hui, J.J S.H.Kim, A.G.Rice
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase Ec: 2.7.1.37 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.208 R_Free 0.306
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.753 72.306 71.944 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.51 Å
ligand	SU9 BindingDB	enzyme	Transferase E.C.2.7.1.37 BRENDA
related structures	by homologous chain: 1H25, 1PXM
Gene Ontology	Chain Function Process Component A
Primary reference	SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2., Moshinsky DJ, Bellamacina CR, Boisvert DC, Huang P, Hui T, Jancarik J, Kim SH, Rice AG, Biochem Biophys Res Commun 2003 Oct 24;310(3):1026-31. PMID:14550307

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (1pf8.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 1PF8 CSU: Contacts of Structural Units for 1PF8 Likely Quarternary Molecular Structure file(s) for 1PF8 Structure Factors (74 Kb) Retrieve 1PF8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PF8 from S2C, [Save to disk] Re-refined 1pf8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PF8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PF8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PF8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pf8a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pf8_A] [1pf8] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 1PF8: [S_TKc ] by SMART

Other resources with information on 1PF8

Community annotation for 1PF8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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