1PGU Protein Binding date May 28, 2003
title Yeast Actin Interacting Protein 1 (Aip1), Se-Met Protein, Mo Crystal Form
authors W.C.Voegtli, A.Y.Madrona, D.K.Wilson
compound source
Molecule: Actin Interacting Protein 1
Chain: A, B
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Aip1 Or Ymr092c Or Ym9582.17c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb4
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.800 154.530 69.000 90.00 90.65 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, ZN enzyme
related structures by homologous chain: 1PI6
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of Aip1p, a WD repeat protein that regulates Cofilin-mediated actin depolymerization., Voegtli WC, Madrona AY, Wilson DK, J Biol Chem 2003 Sep 5;278(36):34373-9. Epub 2003 Jun 14. PMID:12807914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (1pgu.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 1PGU
  • CSU: Contacts of Structural Units for 1PGU
  • Likely Quarternary Molecular Structure file(s) for 1PGU
  • Retrieve 1PGU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PGU from S2C, [Save to disk]
    • View 1PGU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PGU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PGU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pgua1, region A:2-326 [Jmol] [rasmolscript] [script source]
        - Domain d1pgua2, region A:327-613 [Jmol] [rasmolscript] [script source]
        - Domain d1pgub1, region B:2-326 [Jmol] [rasmolscript] [script source]
        - Domain d1pgub2, region B:327-615 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pgu] [1pgu_A] [1pgu_B]
  • SWISS-PROT database: [P46680]
  • Domain organization of [AIP1_YEAST] by SWISSPFAM
  • Domain found in 1PGU: [WD40 ] by SMART
    • Other resources with information on 1PGU
  • Community annotation for 1PGU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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