1PJJ	Hydrolase Dna	date	Jun 03, 2003
title	Complex Between The Lactococcus Lactis Fpg And An Abasic Sit Containing Dna.
authors	L.Serre, K.Pereira De Jesus, S.Boiteux, C.Zelwer, B.Castaing
compound		source
Molecule: Dna (5'-D(Cptpcptptptp(3dr)Ptptptpcpt 3'); Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Gpcpgpapgpapapapcpapapapgp Chain: E Engineered: Yes		Synthetic: Yes
Molecule: Formamidopyrimidine-Dna Glycosylase Chain: A Synonym: Fapy-Dna Glycosylase Ec: 3.2.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Lactococcus Lactis Organism_taxid: 1358 Gene: Mutm Or Fpg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmal-C
symmetry	Space Group: P 41 21 2	R_factor 0.202 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.892 91.892 142.420 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	3DR, GOL, ZN	enzyme	Hydrolase E.C.3.2.2.23 BRENDA
related structures	by homologous chain: 1PJI, 1TDZ
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA., Pereira de Jesus K, Serre L, Zelwer C, Castaing B, Nucleic Acids Res. 2005 Oct 20;33(18):5936-44. Print 2005. PMID:16243784

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (1pjj.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 1PJJ CSU: Contacts of Structural Units for 1PJJ Likely Quarternary Molecular Structure file(s) for 1PJJ Structure Factors (393 Kb) Retrieve 1PJJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PJJ from S2C, [Save to disk] Re-refined 1pjj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PJJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PJJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PJJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pjja2, region A:1-131 [Jmol] [rasmolscript] [script source]     - Domain d1pjja1, region A:132-223 [Jmol] [rasmolscript] [script source]     - Domain d1pjja3, region A:224-271 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pjj_D] [1pjj_A] [1pjj] [1pjj_E] SWISS-PROT database: [P42371] Domain organization of [FPG_LACLC] by SWISSPFAM Domains found in 1PJJ: [Fapy_DNA_glyco] [H2TH ] by SMART

Other resources with information on 1PJJ

Community annotation for 1PJJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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