1PLY Dna date Feb 28, 1995
title Sodium Ions And Water Molecules In The Structure Of Poly D(A D(T)
authors R.Chandrasekaran, A.Radha, H.S.Park
compound source
Molecule: Dna (5'-D(Papapapapa)-3')
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Ptptptptpt)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 1 21
R_factor 0.230 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
18.560 22.680 32.400 90.00 90.00 99.90
method Fiber Diffractionresolution 3.20 Å
ligand NA enzyme
Primary referenceSodium ions and water molecules in the structure of poly(dA).poly(dT)., Chandrasekaran R, Radha A, Park HS, Acta Crystallogr D Biol Crystallogr. 1995 Nov 1;51(Pt 6):1025-35. PMID:15299771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1ply.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1PLY
  • CSU: Contacts of Structural Units for 1PLY
  • Likely Quarternary Molecular Structure file(s) for 1PLY
  • Retrieve 1PLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PLY from S2C, [Save to disk]
  • View 1PLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PLY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ply_A] [1ply] [1ply_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1PLY
  • Community annotation for 1PLY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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