1PM6 Gene Regulation date Jun 10, 2003
title Solution Structure Of Full-Length Excisionase (Xis) From Bac Hk022
authors V.V.Rogov, C.Luecke, L.Muresanu, H.Wienk, I.Kleinhaus, K.Werner, F P.Pristovsek, H.Rueterjans
compound source
Molecule: Excisionase
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Enterobacteria Phage Hk022
Organism_taxid: 10742
Gene: Xis
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppg14_c28s
methodSolution NMR
related structures by homologous chain: 1LX8, 1RH6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and stability of the full-length excisionase from bacteriophage HK022., Rogov VV, Lucke C, Muresanu L, Wienk H, Kleinhaus I, Werner K, Lohr F, Pristovsek P, Ruterjans H, Eur J Biochem 2003 Dec;270(24):4846-58. PMID:14653811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk]
  • Biological Unit Coordinates (1pm6.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1PM6
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PM6 from S2C, [Save to disk]
    • View 1PM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PM6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PM6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pm6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pm6_A] [1pm6]
  • SWISS-PROT database: [P68927]
  • Domain organization of [VXIS_BPHK0] by SWISSPFAM
    • Other resources with information on 1PM6
  • Community annotation for 1PM6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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