1PQY Structural Genomics, Unknown Function date Jun 19, 2003
title Crystal Structure Of Formyl-Coa Transferase Yfdw From E. Col
authors A.Gogos, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Hypothetical Protein Yfdw
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yfdw
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.261 69.539 73.109 90.00 108.64 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand MSE enzyme
related structures by homologous chain: 1PT8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Escherichia coli YfdW, a type III CoA transferase., Gogos A, Gorman J, Shapiro L, Acta Crystallogr D Biol Crystallogr 2004 Mar;60(Pt 3):507-11. Epub 2004, Feb 25. PMID:14993676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1pqy.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1PQY
  • CSU: Contacts of Structural Units for 1PQY
  • Likely Quarternary Molecular Structure file(s) for 1PQY
  • Structure Factors (153 Kb)
  • Retrieve 1PQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PQY from S2C, [Save to disk]
  • Re-refined 1pqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PQY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PQY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pqya_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pqy] [1pqy_A]
  • SWISS-PROT database: [P69902]
  • Domain organization of [FCTA_ECOLI] by SWISSPFAM
    • Other resources with information on 1PQY
  • Community annotation for 1PQY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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