1PXZ Allergen date Jul 07, 2003
title 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allerge Cedar Pollen
authors E.W.Czerwinski, M.A.White, T.Midoro-Horiuti, E.G.Brooks, R.M.Gol
compound source
Molecule: Major Pollen Allergen Jun A 1
Chain: A, B
Organism_scientific: Juniperus Ashei
Organism_common: Ozark White Cedar
Organism_taxid: 13101
Other_details: Pollen
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.636 115.005 73.525 90.00 95.82 90.00
method X-Ray Diffractionresolution 1.70 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of Jun a 1, the Major Cedar Pollen Allergen from Juniperus ashei, Reveals a Parallel beta-Helical Core., Czerwinski EW, Midoro-Horiuti T, White MA, Brooks EG, Goldblum RM, J Biol Chem 2005 Feb 4;280(5):3740-6. Epub 2004 Nov 10. PMID:15539389
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (1pxz.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (1pxz.pdb2.gz) 63 Kb
  • CSU: Contacts of Structural Units for 1PXZ
  • Likely Quarternary Molecular Structure file(s) for 1PXZ
  • Structure Factors (1535 Kb)
  • Retrieve 1PXZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PXZ from S2C, [Save to disk]
  • Re-refined 1pxz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PXZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PXZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PXZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pxza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pxzb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pxz_B] [1pxz_A] [1pxz]
  • SWISS-PROT database: [P81294]
  • Domain organization of [MPAJ1_JUNAS] by SWISSPFAM
  • Domain found in 1PXZ: [Amb_all ] by SMART
  • Other resources with information on 1PXZ
  • Community annotation for 1PXZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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