1PZD Endocytosis Exocytosis date Jul 10, 2003
title Structural Identification Of A Conserved Appendage Domain In Carboxyl-Terminus Of The Copi Gamma-Subunit.
authors G.R.Hoffman, P.B.Rahl, R.N.Collins, R.A.Cerione
compound source
Molecule: Coatomer Gamma Subunit
Chain: A
Fragment: Residues 555-874
Synonym: Gamma-Coat Protein, Gamma-Cop
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Gene: Copg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.570 89.560 98.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand SO4 enzyme
related structures by homologous chain: 1R4X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConserved structural motifs in intracellular trafficking pathways: structure of the gammaCOP appendage domain., Hoffman GR, Rahl PB, Collins RN, Cerione RA, Mol Cell 2003 Sep;12(3):615-25. PMID:14527408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzd.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1PZD
  • CSU: Contacts of Structural Units for 1PZD
  • Likely Quarternary Molecular Structure file(s) for 1PZD
  • Structure Factors (152 Kb)
  • Retrieve 1PZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZD from S2C, [Save to disk]
  • Re-refined 1pzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PZD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzda1, region A:604-762 [Jmol] [rasmolscript] [script source]
        - Domain d1pzda2, region A:763-874 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzd_A] [1pzd]
  • SWISS-PROT database: [P53620]
  • Domain organization of [COPG_BOVIN] by SWISSPFAM
  • Other resources with information on 1PZD
  • Community annotation for 1PZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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