1PZR Transferase date Jul 14, 2003
title Structure Of Fused Docking Domains From The Erythromycin Pol Synthase (Debs), A Model For The Interaction Between Debs2 The B Domain
authors R.W.Broadhurst, D.Nietlispach, M.P.Wheatcroft, P.F.Leadlay, K.J.
compound source
Molecule: Erythronolide Synthase
Chain: A, B
Fragment: Residues 61-120
Synonym: Orf 2, 6-Deoxyerythronolide B Synthase II, Debs 2 Deoxyerythronolide B Synthase III, Debs 3;
Ec: 2.3.1.94
Engineered: Yes
Other_details: C-Terminal Fragment Of Debs2 Fused To N-Term Fragment Of Debs3
Organism_scientific: Saccharopolyspora Erythraea
Organism_taxid: 1836
Gene: Erya
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-3
methodSolution NMR
ligand
enzyme Transferase E.C.2.3.1.94 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of docking domains in modular polyketide synthases., Broadhurst RW, Nietlispach D, Wheatcroft MP, Leadlay PF, Weissman KJ, Chem Biol 2003 Aug;10(8):723-31. PMID:12954331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzr.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1PZR
  • Original NMR restraints for 1PZR from PDB
  • Retrieve 1PZR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZR from S2C, [Save to disk]
  • View 1PZR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PZR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pzrb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzr_A] [1pzr_B] [1pzr]
  • SWISS-PROT database: [Q03132] [Q03133]
  • Domain organization of [ERYA2_SACER] [ERYA3_SACER] by SWISSPFAM
  • Other resources with information on 1PZR
  • Community annotation for 1PZR at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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