1Q9X	Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA	date
authors	Freisinger, E., Grollman, A.P., Miller, H., Kisker, C.
compound		source
symmetry		R_factor R_Free 0.2879
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.69
ligand	3DR, CA, DGP, DOC	enzyme
related structures	by homologous chain: 1CLQ, 1IG9
Gene Ontology	Chain Function Process Component A, D, C, B DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity
Primary reference	Lesion (in)tolerance reveals insights into DNA replication fidelity., Freisinger E, Grollman AP, Miller H, Kisker C, EMBO J 2004 Apr 7;23(7):1494-505. Epub 2004 Apr 1. PMID:15057282

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1385 Kb) [Save to disk] Biological Unit Coordinates (1q9x.pdb1.gz) 345 Kb Biological Unit Coordinates (1q9x.pdb2.gz) 342 Kb Biological Unit Coordinates (1q9x.pdb3.gz) 339 Kb Biological Unit Coordinates (1q9x.pdb4.gz) 342 Kb LPC: Ligand-Protein Contacts for 1Q9X CSU: Contacts of Structural Units for 1Q9X Likely Quarternary Molecular Structure file(s) for 1Q9X Structure Factors (961 Kb) Retrieve 1Q9X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1Q9X from S2C, [Save to disk] Re-refined 1q9x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1Q9X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1Q9X

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1Q9X, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1q9xa1, region A:1-375 [Jmol] [rasmolscript] [script source]     - Domain d1q9xa2, region A:376-903 [Jmol] [rasmolscript] [script source]     - Domain d1q9xb1, region B:1-375 [Jmol] [rasmolscript] [script source]     - Domain d1q9xb2, region B:376-903 [Jmol] [rasmolscript] [script source]     - Domain d1q9xc1, region C:1-375 [Jmol] [rasmolscript] [script source]     - Domain d1q9xc2, region C:376-903 [Jmol] [rasmolscript] [script source]     - Domain d1q9xd1, region D:1-375 [Jmol] [rasmolscript] [script source]     - Domain d1q9xd2, region D:376-903 [Jmol] [rasmolscript] [script source] Fold representative 1q9x from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1q9x_B] [1q9x_H] [1q9x_L] [1q9x_K] [1q9x_J] [1q9x_D] [1q9x] [1q9x_C] [1q9x_A] [1q9x_G] [1q9x_F] [1q9x_E] [1q9x_I] SWISS-PROT database: [Q38087] Domain organization of [DPOL_BPR69] by SWISSPFAM Domain found in 1Q9X: [POLBc ] by SMART

Other resources with information on 1Q9X

Community annotation for 1Q9X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---