1QCM Amyloid date Jul 19, 1996
title Amyloid Beta Peptide (25-35), Nmr, 20 Structures
authors T.Kohno, K.Kobayashi, T.Maeda, K.Sato, A.Takashima
compound source
Molecule: Amyloid Beta Peptide
Chain: A
Fragment: Residues 25 - 35
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structures of the amyloid beta peptide (25-35) in membrane-mimicking environment., Kohno T, Kobayashi K, Maeda T, Sato K, Takashima A, Biochemistry 1996 Dec 17;35(50):16094-104. PMID:8973180
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1qcm.pdb1.gz) 3 Kb
  • CSU: Contacts of Structural Units for 1QCM
  • Retrieve 1QCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QCM from S2C, [Save to disk]
  • View 1QCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QCM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QCM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qcm__, region [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qcm_A] [1qcm]
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid β-protein peptide (aβpp) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Other resources with information on 1QCM
  • Community annotation for 1QCM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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