1QL1 Virus date Aug 20, 1999
title Inovirus (Filamentous Bacteriophage) Strain Pf1 Major Coat P Assembly
authors L.C.Welsh, M.F.Symmons, D.A.Marvin
compound source
Molecule: Pf1 Bacteriophage Coat Protein B
Chain: A
Synonym: Pf1 Inovirus
Engineered: Yes
Other_details: Major Coat Protein Assembly In The Higher-Te Symmetry
 Organism_scientific: Pseudomonas Phage Pf1
Organism_taxid: 10871
Expression_system: Pseudomonas Aeruginosa
Expression_system_taxid: 287
Other_details: Grown In Pseudomonas Aeruginosa
symmetry Space Group: P 1
R_factor 0.300 R_Free 0.380
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Fiber Diffractionresolution 3.10 Å
Primary referenceThe molecular structure and structural transition of the alpha-helical capsid in filamentous bacteriophage Pf1., Welsh LC, Symmons MF, Marvin DA, Acta Crystallogr D Biol Crystallogr 2000 Feb;56 ( Pt 2):137-50. PMID:10666593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1ql1.pdb1.gz) 136 Kb
  • CSU: Contacts of Structural Units for 1QL1
  • Likely Quarternary Molecular Structure file(s) for 1QL1
  • Structure Factors (14 Kb)
  • Retrieve 1QL1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QL1 from S2C, [Save to disk]
    • View 1QL1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QL1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QL1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ql1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ql1_A] [1ql1]
  • SWISS-PROT database: [P03621]
  • Domain organization of [CAPSD_BPPF1] by SWISSPFAM
    • Other resources with information on 1QL1
  • Community annotation for 1QL1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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