1QM9 Ribonucleoprotein date Sep 22, 1999
title Nmr, Representative Structure
authors M.R.Conte, T.Grune, S.Curry, S.Matthews
compound source
Molecule: Polypyrimidine Tract-Binding Protein
Chain: A
Fragment: Rna Binding Fragment
Synonym: Ptb, Ptb-C198, Heterogeneous Nuclear Ribonucleoprotein I, Hnrnp I, 57 Kd Rna-Binding Protein Pptb-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Nucleuscytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet-15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold., Conte MR, Grune T, Ghuman J, Kelly G, Ladas A, Matthews S, Curry S, EMBO J 2000 Jun 15;19(12):3132-41. PMID:10856256
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1QM9
  • Original NMR restraints for 1QM9 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1QM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QM9 from S2C, [Save to disk]
    • View 1QM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QM9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qm9a1, region A:1-110 [Jmol] [rasmolscript] [script source]
        - Domain d1qm9a2, region A:111-198 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qm9_A] [1qm9]
  • SWISS-PROT database: [P26599]
  • Domain organization of [PTBP1_HUMAN] by SWISSPFAM
  • Domain found in 1QM9: [RRM ] by SMART
    • Other resources with information on 1QM9
  • Community annotation for 1QM9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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