1QZC Rna Binding Protein Rna date Sep 16, 2003
title Coordinates Of S12, Sh44, Lh69 And Srl Separately Fitted Int Cryo-Em Map Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound Ribosome
authors M.Valle, A.Zavialov, W.Li, S.M.Stagg, J.Sengupta, R.C.Nielsen, P.N S.C.Harvey, M.Ehrenberg, J.Frank
compound source
Molecule: 16s Rrna
Chain: A
Fragment: Helix 44
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre 600

Molecule: 23s Rrna
Chain: B
Fragment: Helix 69
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre 600

Molecule: 23s Rrna
Chain: C
Fragment: Sarcinricin Loop (Srl)
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre 600

Molecule: 30s Ribosomal Protein S12
Chain: L
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceIncorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy., Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J, Nat Struct Biol 2003 Nov;10(11):899-906. Epub 2003 Oct 19. PMID:14566331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (1qzc.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1QZC
  • Likely Quarternary Molecular Structure file(s) for 1QZC
  • Retrieve 1QZC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QZC from S2C, [Save to disk]
    • View 1QZC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QZC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QZC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qzca_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qzcb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qzcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qzcl_, region L [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qzc_C] [1qzc_L] [1qzc_B] [1qzc_A] [1qzc]
  • SWISS-PROT database: [Q5SHN3]
  • Domain organization of [RS12_THET8] by SWISSPFAM
    • Other resources with information on 1QZC
  • Community annotation for 1QZC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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