1QZV Photosynthesis date Sep 18, 2003
title Crystal Structure Of Plant Photosystem I
authors A.Ben-Shem, F.Frolow, N.Nelson
compound source
Molecule: Plant Photosystem I: Subunit Psaa
Chain: A, P
 Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psab
Chain: B, Q
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psac
Chain: C, R
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psad
Chain: D, S
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psae
Chain: E, T
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psaf
Chain: F, U
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psag
Chain: G, V
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psah
Chain: H, W
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psai
Chain: I, Y
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psaj
Chain: J, Z
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psak
Chain: K, 5
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Photosystem I: Subunit Psal
Chain: L, 6
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Light Harvesting Complex I(Lhci): Subunit L
Chain: 1, 7
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Light Harvesting Complex I(Lhci): Subunit L
Chain: 2, 8
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Light Harvesting Complex I(Lhci): Subunit L
Chain: 3, 9
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane

Molecule: Plant Light Harvesting Complex I(Lhci): Subunit L
Chain: 4, 0
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska
Cellular_location: Thylakoid Membrane
symmetry Space Group: P 1 21 1
R_factor 0.410 R_Free 0.420
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.283 190.376 220.253 90.00 90.48 90.00
method X-Ray Diffractionresolution 4.44 Å
ligand CLA, PQN, SF4 enzyme
Primary referenceCrystal structure of plant photosystem I., Ben-Shem A, Frolow F, Nelson N, Nature 2003 Dec 11;426(6967):630-5. PMID:14668855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (1qzv.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (1qzv.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 1QZV
  • CSU: Contacts of Structural Units for 1QZV
  • Likely Quarternary Molecular Structure file(s) for 1QZV
  • Retrieve 1QZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QZV from S2C, [Save to disk]
    • View 1QZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QZV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QZV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qzv0_, region 0 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv2_, region 2 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv4_, region 4 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv5_, region 5 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv6_, region 6 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv7_, region 7 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv8_, region 8 [Jmol] [rasmolscript] [script source]
        - Domain d1qzv9_, region 9 [Jmol] [rasmolscript] [script source]
        - Domain d1qzva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qzvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qzvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qzvd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1qzve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1qzvf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1qzvg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1qzvh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1qzvi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1qzvj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1qzvk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1qzvl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1qzvp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1qzvq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1qzvr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1qzvs_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1qzvt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1qzvu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1qzvv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1qzvw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1qzvy_, region Y [Jmol] [rasmolscript] [script source]
        - Domain d1qzvz_, region Z [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qzv_1] [1qzv_W] [1qzv_U] [1qzv_P] [1qzv_6] [1qzv_2] [1qzv_Y] [1qzv_D] [1qzv_V] [1qzv_5] [1qzv_9] [1qzv_E] [1qzv_C] [1qzv_Q] [1qzv_7] [1qzv_R] [1qzv_G] [1qzv_F] [1qzv_S] [1qzv_8] [1qzv_J] [1qzv_K] [1qzv_H] [1qzv_Z] [1qzv_3] [1qzv_4] [1qzv_I] [1qzv_A] [1qzv] [1qzv_0] [1qzv_T] [1qzv_B] [1qzv_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1QZV
  • Community annotation for 1QZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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