1R78 Transferase date Oct 20, 2003
title Cdk2 Complex With A 4-Alkynyl Oxindole Inhibitor
authors K.C.Luk, M.E.Simcox, A.Schutt, K.Rowan, T.Thompson, Y.Chen, U.Kammlott, W.Depinto, P.Dunten, A.Dermatakis
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pbac2
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.880 71.962 72.779 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FMD enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1AQ1, 1H1R
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA new series of potent oxindole inhibitors of CDK2., Luk KC, Simcox ME, Schutt A, Rowan K, Thompson T, Chen Y, Kammlott U, DePinto W, Dunten P, Dermatakis A, Bioorg Med Chem Lett 2004 Feb 23;14(4):913-7. PMID:15012993
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1r78.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1R78
  • CSU: Contacts of Structural Units for 1R78
  • Likely Quarternary Molecular Structure file(s) for 1R78
  • Retrieve 1R78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R78 from S2C, [Save to disk]
  • View 1R78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R78
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R78, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r78a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1r78 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r78] [1r78_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1R78: [S_TKc ] by SMART
  • Other resources with information on 1R78
  • Community annotation for 1R78 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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