1R9U Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings date
authors Shenkarev, Z.O., Balashova, T.A., Yakimenko, Z.A., Ovchinnikova, T.V., Arseniev, A.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 24 Modelsresolution
ligand ACE, AIB, DIV, HYP, PHL enzyme
Primary referenceBiosynthetic uniform 13C,15N-labelling of zervamicin IIB. Complete 13C and 15N NMR assignment., Ovchinnikova TV, Shenkarev ZO, Yakimenko ZA, Svishcheva NV, Tagaev AA, Skladnev DA, Arseniev AS, J Pept Sci. 2003 Nov-Dec;9(11-12):817-26. PMID:14658801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1r9u.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1R9U
  • CSU: Contacts of Structural Units for 1R9U
  • Original NMR restraints for 1R9U from PDB
  • Retrieve 1R9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R9U from S2C, [Save to disk]
  • View 1R9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R9U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r9ua_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r9u] [1r9u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1R9U
  • Community annotation for 1R9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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