1RI0 Hormone Growth Factor date Nov 16, 2003
title Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf
authors S.C.Sue, J.Y.Chen, T.H.Huang
compound source
Molecule: Hepatoma-Derived Growth Factor
Chain: A
Fragment: N-Terminal 100 Residues
Synonym: The Hath Domain Of Hhdgf, Hdgf, High-Mobility Grou 1-Like 2, Hmg-1l2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdgf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
methodSolution NMR
related structures by homologous chain: 1N27
Primary referenceSolution structure and heparin interaction of human hepatoma-derived growth factor., Sue SC, Chen JY, Lee SC, Wu WG, Huang TH, J Mol Biol 2004 Nov 5;343(5):1365-77. PMID:15491618
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (1ri0.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1RI0
  • Original NMR restraints for 1RI0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RI0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RI0 from S2C, [Save to disk]
    • View 1RI0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RI0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RI0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ri0a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ri0] [1ri0_A]
  • SWISS-PROT database: [P51858]
  • Domain organization of [HDGF_HUMAN] by SWISSPFAM
  • Domain found in 1RI0: [PWWP ] by SMART
    • Other resources with information on 1RI0
  • Community annotation for 1RI0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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