1RJU Metal Binding Protein date Nov 20, 2003
title Crystal Structure Of A Truncated Form Of Yeast Copper Thionein
authors V.Calderone, B.Dolderer, H.J.Hartmann, H.Echner, C.Luchinat, C.Del Bianco, S.Mangani, U.Weser
compound source
Molecule: Metallothionein
Chain: V
Synonym: Cu-Mt, Copper Chelatin
Engineered: Yes
 Synthetic: Yes
Other_details: The Protein Was Chemically Synthesized. The Sequence Of The Protein Is Naturally Found In Saccharomyces Cerevisiae (Baker'S Yeast).
symmetry Space Group: P 43 3 2
R_factor 0.145 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.167 62.167 62.167 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.44 Å
ligand CU1 enzyme
note 1RJU is a representative structure
related structures by homologous chain: 1FMY
Gene
Ontology
ChainFunctionProcessComponent
V


Primary referenceThe crystal structure of yeast copper thionein: the solution of a long-lasting enigma., Calderone V, Dolderer B, Hartmann HJ, Echner H, Luchinat C, Del Bianco C, Mangani S, Weser U, Proc Natl Acad Sci U S A 2005 Jan 4;102(1):51-6. Epub 2004 Dec 21. PMID:15613489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1rju.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1RJU
  • CSU: Contacts of Structural Units for 1RJU
  • Likely Quarternary Molecular Structure file(s) for 1RJU
  • Structure Factors (72 Kb)
  • Retrieve 1RJU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJU from S2C, [Save to disk]
  • Re-refined 1rju structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RJU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RJU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1RJU from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjuv_, region V [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rju] [1rju_V]
  • SWISS-PROT database: [P07215]
  • Domain organization of [MTCU_YEAST] by SWISSPFAM
    • Other resources with information on 1RJU
  • Community annotation for 1RJU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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