1RT1 Nucleotidyltransferase date Mar 16, 1996
title Crystal Structure Of Hiv-1 Reverse Transcriptase Complexed With Mkc-442
authors J.Ren, R.Esnouf, A.Hopkins, B.Willcox, Y.Jones, C.Ross, D.Stammers, D.Stuart
compound source
Molecule: Hiv-1 Reverse Transcriptase
Chain: A
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Hxb2 Isolate
Cell_line: 293
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
Expression_system_gene: Hiv-1 Pol

Molecule: Hiv-1 Reverse Transcriptase
Chain: B
Synonym: Hiv-1 Rt
Ec: 2.7.7.49
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Hxb2 Isolate
Cell_line: 293
Gene: Hiv-1 Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: 293
Expression_system_gene: Hiv-1 Pol
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.800 109.800 72.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand CSD, MKC BindingDB enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1C0U, 1RT2
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceComplexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors., Hopkins AL, Ren J, Esnouf RM, Willcox BE, Jones EY, Ross C, Miyasaka T, Walker RT, Tanaka H, Stammers DK, Stuart DI, J Med Chem 1996 Apr 12;39(8):1589-600. PMID:8648598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (1rt1.pdb1.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 1RT1
  • CSU: Contacts of Structural Units for 1RT1
  • Likely Quarternary Molecular Structure file(s) for 1RT1
  • Retrieve 1RT1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RT1 from S2C, [Save to disk]
  • View 1RT1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RT1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RT1, from MSDmotif at EBI
  • Genome occurence of 1RT1's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rt1a2, region A:1-429 [Jmol] [rasmolscript] [script source]
        - Domain d1rt1a1, region A:430-539 [Jmol] [rasmolscript] [script source]
        - Domain d1rt1b1, region B:6-431 [Jmol] [rasmolscript] [script source]
  • Fold representative 1rt1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rt1] [1rt1_A] [1rt1_B]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Other resources with information on 1RT1
  • Community annotation for 1RT1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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