1RVW Oxygen Transport date Mar 20, 1997
title R State Human Hemoglobin [Alpha V96w], Carbonmonoxy
authors Y.A.Puius, M.Zou, N.T.Ho, C.Ho, S.C.Almo
compound source
Molecule: Hemoglobin
Chain: A
Synonym: R Hb (Alpha 96 Val -> Trp)
Engineered: Yes
Mutation: Yes
Other_details: Carbonmonxy Hemes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Erythrocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Phe2

Molecule: Hemoglobin
Chain: B
Synonym: R Hb (Alpha 96 Val -> Trp)
Engineered: Yes
Mutation: Yes
Other_details: Carbonmonxy Hemes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Erythrocyte
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Phe2
symmetry Space Group: P 41 21 2
R_factor 0.167 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.282 54.282 194.122 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CMO, HEM, PO4 enzyme
related structures by homologous chain: 1B86, 1GLI
Gene
Ontology
ChainFunctionProcessComponent
A
  • peroxidase activity


  • B
  • peroxidase activity


  • Primary referenceNovel water-mediated hydrogen bonds as the structural basis for the low oxygen affinity of the blood substitute candidate rHb(alpha 96Val-->Trp)., Puius YA, Zou M, Ho NT, Ho C, Almo SC, Biochemistry 1998 Jun 30;37(26):9258-65. PMID:9649306
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1rvw.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 1RVW
  • CSU: Contacts of Structural Units for 1RVW
  • Likely Quarternary Molecular Structure file(s) for 1RVW
  • Retrieve 1RVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RVW from S2C, [Save to disk]
  • View 1RVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RVW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RVW, from MSDmotif at EBI
  • Genome occurence of 1RVW's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rvwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rvwb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1rvw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rvw_B] [1rvw] [1rvw_A]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1RVW
  • Community annotation for 1RVW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1RVW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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