1RZU Transferase date Dec 29, 2003
title Crystal Structure Of The Glycogen Synthase From A. Tumefacie Complex With Adp
authors A.Buschiazzo, M.E.Guerin, J.E.Ugalde, R.A.Ugalde, W.Shepard, P.M.
compound source
Molecule: Glycogen Synthase 1
Chain: A, B
Synonym: Starch [Bacterial Glycogen] Synthase 1
Ec: 2.4.1.21
Engineered: Yes
Organism_scientific: Agrobacterium Tumefaciens
Organism_taxid: 358
Gene: Glga1, Glga, Atu4075, Agr_l_1562
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22
symmetry Space Group: P 1 21 1
R_factor 0.180 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.357 88.115 84.463 90.00 98.19 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ADP enzyme Transferase E.C.2.4.1.21 BRENDA
related structures by homologous chain: 1RZV
Gene AGR (L. alpinum)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of glycogen synthase: homologous enzymes catalyze glycogen synthesis and degradation., Buschiazzo A, Ugalde JE, Guerin ME, Shepard W, Ugalde RA, Alzari PM, EMBO J 2004 Aug 18;23(16):3196-205. Epub 2004 Jul 22. PMID:15272305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (1rzu.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (1rzu.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1RZU
  • CSU: Contacts of Structural Units for 1RZU
  • Likely Quarternary Molecular Structure file(s) for 1RZU
  • Structure Factors (549 Kb)
  • Retrieve 1RZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RZU from S2C, [Save to disk]
  • Re-refined 1rzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RZU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RZU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rzua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rzub_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rzu_A] [1rzu] [1rzu_B]
  • SWISS-PROT database: [P0A3F3]
  • Domain organization of [GLGA1_RHIRD] by SWISSPFAM
  • Other resources with information on 1RZU
  • Community annotation for 1RZU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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