1S0V	Transferase Dna-Rna Hybrid	date	Jan 05, 2004
title	Structural Basis For Substrate Selection By T7 Rna Polymeras
authors	D.Temiakov, V.Patlan, M.Anikin, W.T.Mcallister, S.Yokoyama, D.G.V Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: 5'-D(Ggpgpapaptpcpgpaptpaptpcpgpcp 3'; Chain: E, H, K, N Engineered: Yes Other_details: Dna Template Strand		Synthetic: Yes
Molecule: 5'-R(Apapcpugpcpgpgpcpgpapu)-3' Chain: F, I, L, O Engineered: Yes Other_details: Rna Transcript		Synthetic: Yes
Molecule: 5'-D(Gptpcpgpaptptpcpcpc)-3' Chain: G, J, M, P Engineered: Yes Other_details: Dna Non-Template Strand		Synthetic: Yes
Molecule: Dna-Directed Rna Polymerase Chain: A, B, C, D Ec: 2.7.7.6 Engineered: Yes		Organism_scientific: Enterobacteria Phage T7 Organism_taxid: 10760 Gene: 1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dcat4
symmetry	Space Group: P 1	R_factor 0.255 R_Free 0.307
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.133 87.703 206.531 91.93 91.02 110.66
method	X-Ray Diffraction	resolution	3.20 Å
ligand	APC, MG	enzyme	Transferase E.C.2.7.7.6 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for substrate selection by t7 RNA polymerase., Temiakov D, Patlan V, Anikin M, McAllister WT, Yokoyama S, Vassylyev DG, Cell. 2004 Feb 6;116(3):381-91. PMID:15016373

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (622 Kb) [Save to disk] Biological Unit Coordinates (1s0v.pdb1.gz) 159 Kb Biological Unit Coordinates (1s0v.pdb2.gz) 160 Kb Biological Unit Coordinates (1s0v.pdb3.gz) 159 Kb Biological Unit Coordinates (1s0v.pdb4.gz) 158 Kb LPC: Ligand-Protein Contacts for 1S0V CSU: Contacts of Structural Units for 1S0V Likely Quarternary Molecular Structure file(s) for 1S0V Structure Factors (830 Kb) Retrieve 1S0V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1S0V from S2C, [Save to disk] Re-refined 1s0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1S0V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1S0V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1S0V, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1s0va_, region A [Jmol] [rasmolscript] [script source]     - Domain d1s0vb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1s0vc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1s0vd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1s0v_J] [1s0v_I] [1s0v_E] [1s0v_G] [1s0v_A] [1s0v_H] [1s0v] [1s0v_N] [1s0v_O] [1s0v_M] [1s0v_D] [1s0v_K] [1s0v_L] [1s0v_F] [1s0v_C] [1s0v_B] [1s0v_P] SWISS-PROT database: [P00573] Domain organization of [RPOL_BPT7] by SWISSPFAM Domain found in 1S0V: [RPOL_N ] by SMART

Other resources with information on 1S0V

Community annotation for 1S0V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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