1S2Y Oxidoreductase date Jan 12, 2004
title Crystal Structure Of Maob In Complex With N-Propargyl-1(S)- Aminoindan
authors C.Binda, F.Hubalek, M.Li, Y.Herzig, J.Sterling, D.E.Edmondson, A.Mattevi
compound source
Molecule: Amine Oxidase [Flavin-Containing] B
Chain: A, B
Synonym: Monoamine Oxidase, Mao-B
Ec: 1.4.3.4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Maob
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic3.5k
symmetry Space Group: C 2 2 2
R_factor 0.204 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.898 224.218 86.039 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.12 Å
ligand FAD, RSA BindingDB enzyme Oxidoreductase E.C.1.4.3.4 BRENDA
related structures by homologous chain: 1OJB, 1S2Q
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceCrystal Structures of Monoamine Oxidase B in Complex with Four Inhibitors of the N-Propargylaminoindan Class., Binda C, Hubalek F, Li M, Herzig Y, Sterling J, Edmondson DE, Mattevi A, J Med Chem 2004 Mar 25;47(7):1767-1774. PMID:15027868
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (1s2y.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 1S2Y
  • CSU: Contacts of Structural Units for 1S2Y
  • Likely Quarternary Molecular Structure file(s) for 1S2Y
  • Structure Factors (555 Kb)
  • Retrieve 1S2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S2Y from S2C, [Save to disk]
  • Re-refined 1s2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S2Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S2Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s2ya2, region A:290-401 [Jmol] [rasmolscript] [script source]
        - Domain d1s2ya1, region A:3-289,A:402-501 [Jmol] [rasmolscript] [script source]
        - Domain d1s2yb2, region B:290-401 [Jmol] [rasmolscript] [script source]
        - Domain d1s2yb1, region B:3-289,B:402-496 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s2y] [1s2y_A] [1s2y_B]
  • SWISS-PROT database: [P27338]
  • Domain organization of [AOFB_HUMAN] by SWISSPFAM
    • Other resources with information on 1S2Y
  • Community annotation for 1S2Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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