1S5A Structural Genomics, Unknown Function date Jan 20, 2004
title Crystal Structure Of Putative Isomerase From Bacillus Subtil
authors Y.Kim, L.Lezondra, A.Joachimiak, Midwest Center For Structural (Mcsg)
compound source
Molecule: Hypothetical Protein Yese
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Yese, Bsu06870
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1
R_factor 0.199 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.613 55.725 72.405 102.47 99.98 106.51
method X-Ray Diffractionresolution 1.70 Å
ligand ACT, GOL, MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1s5a.pdb1.gz) 106 Kb
  • LPC: Ligand-Protein Contacts for 1S5A
  • CSU: Contacts of Structural Units for 1S5A
  • Likely Quarternary Molecular Structure file(s) for 1S5A
  • Structure Factors (1090 Kb)
  • Retrieve 1S5A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S5A from S2C, [Save to disk]
  • Re-refined 1s5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S5A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S5A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S5A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s5aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s5ab_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1s5ac_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1s5ad_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s5a_D] [1s5a_A] [1s5a] [1s5a_C] [1s5a_B]
  • SWISS-PROT database: [O31511]
  • Domain organization of [YESE_BACSU] by SWISSPFAM
    • Other resources with information on 1S5A
  • Community annotation for 1S5A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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