1S7F Transferase date Jan 29, 2004
title Riml- Ribosomal L7l12 Alpha-N-Protein Acetyltransferase Cry I (Apo)
authors M.W.Vetting, L.P.De Carvalho, S.L.Roderick, J.S.Blanchard
compound source
Molecule: Acetyl Transferase
Chain: A
Synonym: Acetylating Enzyme For N-Terminal Of Ribosomal Pro L7l12, Riml;
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 99287
Strain: Lt2
Gene: Riml
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a+
symmetry Space Group: P 43 2 2
R_factor 0.195 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.400 68.400 89.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, MLA enzyme Transferase E.C.2.3.1 BRENDA
related structures by homologous chain: 1S7K, 1S7N
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Novel Dimeric Structure of the RimL N{alpha}-acetyltransferase from Salmonella typhimurium., Vetting MW, de Carvalho LP, Roderick SL, Blanchard JS, J Biol Chem 2005 Jun 10;280(23):22108-14. Epub 2005 Apr 6. PMID:15817456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1s7f.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1S7F
  • CSU: Contacts of Structural Units for 1S7F
  • Likely Quarternary Molecular Structure file(s) for 1S7F
  • Structure Factors (114 Kb)
  • Retrieve 1S7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S7F from S2C, [Save to disk]
  • Re-refined 1s7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S7F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S7F, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s7f] [1s7f_A]
  • SWISS-PROT database: [Q8ZPC0]
  • Domain organization of [Q8ZPC0_SALTY] by SWISSPFAM
  • Other resources with information on 1S7F
  • Community annotation for 1S7F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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