1SFI Hydrolase Hydrolase Inhibitor date Dec 16, 1998
title High Resolution Structure Of A Potent, Cyclic Protease Inhib Sunflower Seeds
authors S.Luckett, R.S.Garcia, J.J.Barker, A.V.Konarev, P.Shewry, A.R.Cla R.L.Brady
compound source
Molecule: Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas

Molecule: Trypsin Inhibitor 1
Chain: I
Synonym: Sfti-1
Other_details: Cyclic Peptide

Organism_scientific: Helianthus Annuus
Organism_common: Common Sunflower
Organism_taxid: 4232
Strain: Sunbred 246
Organ: Seed
Tissue: Endosperm
symmetry Space Group: P 21 21 21
R_factor 0.175 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.610 64.430 70.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand CA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1C2G, 1O2J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structure of a potent, cyclic proteinase inhibitor from sunflower seeds., Luckett S, Garcia RS, Barker JJ, Konarev AV, Shewry PR, Clarke AR, Brady RL, J Mol Biol 1999 Jul 9;290(2):525-33. PMID:10390350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1sfi.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1SFI
  • CSU: Contacts of Structural Units for 1SFI
  • Likely Quarternary Molecular Structure file(s) for 1SFI
  • Retrieve 1SFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SFI from S2C, [Save to disk]
  • View 1SFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SFI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SFI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sfia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sfi_I] [1sfi_A] [1sfi]
  • SWISS-PROT database: [Q4GWU5] [P00760]
  • Domain organization of [SFTI1_HELAN] [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1SFI: [Tryp_SPc ] by SMART
  • Other resources with information on 1SFI
  • Community annotation for 1SFI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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