1SOF	Electron Transport	date	Mar 14, 2004
title	Crystal Structure Of The Azotobacter Vinelandii Bacterioferr 2.6 A Resolution
authors	H.L.Liu, J.F.Huang, R.C.Bi
compound		source
Molecule: Bacterioferritin Chain: A, B, C, D, E, F, G, H Synonym: Bfr, Cytochrome B-557.5		Organism_scientific: Azotobacter Vinelandii Organism_taxid: 354 Strain: Uw3
symmetry	Space Group: H 3	R_factor 0.196 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.965 124.965 287.406 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	BA, FE2, HEM, MG	enzyme
related structures	by homologous chain: 1BCF
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	2.6 A resolution crystal structure of the bacterioferritin from Azotobacter vinelandii., Liu HL, Zhou HN, Xing WM, Zhao JF, Li SX, Huang JF, Bi RC, FEBS Lett 2004 Aug 27;573(1-3):93-8. PMID:15327981

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk] Biological Unit Coordinates (1sof.pdb1.gz) 626 Kb LPC: Ligand-Protein Contacts for 1SOF CSU: Contacts of Structural Units for 1SOF Likely Quarternary Molecular Structure file(s) for 1SOF Structure Factors (436 Kb) Retrieve 1SOF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SOF from S2C, [Save to disk] Re-refined 1sof structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SOF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SOF

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1SOF, from MSDmotif at EBI Fold representative 1sof from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1sof_F] [1sof_D] [1sof] [1sof_A] [1sof_E] [1sof_G] [1sof_C] [1sof_H] [1sof_B] SWISS-PROT database: [P22759] Domain organization of [BFR_AZOVI] by SWISSPFAM

Other resources with information on 1SOF

Community annotation for 1SOF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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