1SSZ Conformational Mapping of Mini-B: An N-terminal/C-terminal Construct of Surfactant Protein B Using 13C-Enhanced Fourier Transform Infrared (FTIR) Spectroscopy date
authors Waring, A.J., Walther, F.J., Gordon, L.M., Hernandez-Juviel, J.M., Hong, T., Sherman, M.A., Alonso, C., Alig, T., Braun, A., Bacon, D., Zasadzinski, J.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 10 Modelsresolution
Primary referenceThe role of charged amphipathic helices in the structure and function of surfactant protein B., Waring AJ, Walther FJ, Gordon LM, Hernandez-Juviel JM, Hong T, Sherman MA, Alonso C, Alig T, Braun A, Bacon D, Zasadzinski JA, J Pept Res 2005 Dec;66(6):364-74. PMID:16316452
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1ssz.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1SSZ
  • Retrieve 1SSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SSZ from S2C, [Save to disk]
    • View 1SSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SSZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SSZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ssza_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ssz_A] [1ssz]
  • SWISS-PROT database: [P07988]
  • Domain organization of [PSPB_HUMAN] by SWISSPFAM
    • Other resources with information on 1SSZ
  • Community annotation for 1SSZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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