1SUF Oxidoreductase date Mar 26, 2004
title Carbon Monoxide Dehydrogenase From Carboxydothermus Hydrogen Inactive State
authors H.Dobbek, V.Svetlitchnyi, J.Liss, O.Meyer
compound source
Molecule: Carbon Monoxide Dehydrogenase 2
Chain: A
Synonym: Codh 2
Ec: 1.2.99.2
Organism_scientific: Carboxydothermus Hydrogenoformans
Organism_taxid: 129958
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.614 75.004 71.374 90.00 110.97 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand FES, NFS, SF4 enzyme Oxidoreductase E.C.1.2.99.2 BRENDA
related structures by homologous chain: 1SU6, 1SU7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarbon monoxide induced decomposition of the active site [Ni-4Fe-5S] cluster of CO dehydrogenase., Dobbek H, Svetlitchnyi V, Liss J, Meyer O, J Am Chem Soc 2004 May 5;126(17):5382-7. PMID:15113209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (1suf.pdb1.gz) 445 Kb
  • LPC: Ligand-Protein Contacts for 1SUF
  • CSU: Contacts of Structural Units for 1SUF
  • Likely Quarternary Molecular Structure file(s) for 1SUF
  • Structure Factors (1282 Kb)
  • Retrieve 1SUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SUF from S2C, [Save to disk]
  • Re-refined 1suf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SUF from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SUF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sufa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1suf_A] [1suf]
  • SWISS-PROT database: [Q9F8A8]
  • Domain organization of [COOS2_CARHZ] by SWISSPFAM
  • Other resources with information on 1SUF
  • Community annotation for 1SUF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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