1SVA Virus date Nov 27, 1995
title Simian Virus 40
authors T.Stehle, S.J.Gamblin, S.C.Harrison
compound source
Molecule: Simian Virus 40
Chain: 1, 2, 3, 4, 5, 6
Organism_scientific: Simian Virus 40
Organism_taxid: 10633
symmetry Space Group: I 2 3
R_factor 0.257 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
558.000 558.000 558.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
note 1SVA (Molecule of the Month:pdb47)
Gene
Ontology
ChainFunctionProcessComponent
6, 4, 1, 3, 2, 5


Primary referenceThe structure of simian virus 40 refined at 3.1 A resolution., Stehle T, Gamblin SJ, Yan Y, Harrison SC, Structure 1996 Feb 15;4(2):165-82. PMID:8805523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (1sva.pdb1.gz) 19401 Kb
  • CSU: Contacts of Structural Units for 1SVA
  • Likely Quarternary Molecular Structure file(s) for 1SVA
  • Retrieve 1SVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVA from S2C, [Save to disk]
  • View 1SVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVA
  • VIPERdb: visual, structural and computational analysis of 1SVA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SVA, from MSDmotif at EBI
  • Genome occurence of 1SVA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sva1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1sva2_, region 2 [Jmol] [rasmolscript] [script source]
        - Domain d1sva3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1sva4_, region 4 [Jmol] [rasmolscript] [script source]
        - Domain d1sva5_, region 5 [Jmol] [rasmolscript] [script source]
        - Domain d1sva6_, region 6 [Jmol] [rasmolscript] [script source]
  • Fold representative 1sva from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sva_6] [1sva_5] [1sva_1] [1sva] [1sva_2] [1sva_4] [1sva_3]
  • SWISS-PROT database: [P03087]
  • Domain organization of [VP1_SV40] by SWISSPFAM
  • Other resources with information on 1SVA
  • Community annotation for 1SVA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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