1SVB Viral Protein date Nov 27, 1995
title Envelope Glycoprotein From Tick-Borne Encephalitis Virus
authors F.A.Rey, S.C.Harrison
compound source
Molecule: Tick-Borne Encephalitis Virus Glycoprotein
Chain: A
Organism_scientific: Tick-Borne Encephalitis Virus
Organism_taxid: 11084
symmetry Space Group: P 61 2 2
R_factor 0.183 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.000 144.000 119.000 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand NAG enzyme
related structures by homologous chain: 1URZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution., Rey FA, Heinz FX, Mandl C, Kunz C, Harrison SC, Nature 1995 May 25;375(6529):291-8. PMID:7753193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1svb.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 1SVB
  • CSU: Contacts of Structural Units for 1SVB
  • Likely Quarternary Molecular Structure file(s) for 1SVB
  • Retrieve 1SVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SVB from S2C, [Save to disk]
  • View 1SVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SVB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SVB, from MSDmotif at EBI
  • Genome occurence of 1SVB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1svb_2, region 1-302 [Jmol] [rasmolscript] [script source]
        - Domain d1svb_1, region 303-395 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1svb] [1svb_A]
  • SWISS-PROT database: [P14336]
  • Belongs to the viral pore-forming membrane fusion protein-3 (vmfp3) family according to TCDB.
  • Domain organization of [POLG_TBEVW] by SWISSPFAM
  • Other resources with information on 1SVB
  • Community annotation for 1SVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1SVB from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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