1SXE Transcription, Signaling Protein date Mar 30, 2004
title The Solution Structure Of The Pointed (Pnt) Domain From The Transcrition Factor Erg
authors C.D.Mackereth, M.Schaerpf, L.N.Gentile, S.E.Macintosh, C.M.Slups L.P.Mcintosh
compound source
Molecule: Transcriptional Regulator Erg
Chain: A
Fragment: Pnt Domain
Synonym: Transforming Protein Erg
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiversity in Structure and Function of the Ets Family PNT Domains., Mackereth CD, Scharpf M, Gentile LN, MacIntosh SE, Slupsky CM, McIntosh LP, J Mol Biol 2004 Sep 24;342(4):1249-64. PMID:15351649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk]
  • Biological Unit Coordinates (1sxe.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1SXE
  • Original NMR restraints for 1SXE from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1SXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SXE from S2C, [Save to disk]
    • View 1SXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1SXE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1SXE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1sxea_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1sxe] [1sxe_A]
  • SWISS-PROT database: [P11308]
  • Domain organization of [ERG_HUMAN] by SWISSPFAM
  • Domain found in 1SXE: [SAM_PNT ] by SMART
    • Other resources with information on 1SXE
  • Community annotation for 1SXE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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