1T0K Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex date
authors Chao, J.A., Williamson, J.R.
compound source
symmetry
R_factor
R_Free 0.32
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.24
ligand GLC enzyme
note 1T0K supersedes 1CK5, 1CK8, 1CN8, 1CN9
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • B

  • cytosolic large ribosomal su...
  • Primary referenceJoint X-Ray and NMR Refinement of the Yeast L30e-mRNA Complex., Chao JA, Williamson JR, Structure (Camb) 2004 Jul;12(7):1165-76. PMID:15242593
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (1t0k.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1T0K
  • CSU: Contacts of Structural Units for 1T0K
  • Likely Quarternary Molecular Structure file(s) for 1T0K
  • Retrieve 1T0K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T0K from S2C, [Save to disk]
  • View 1T0K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T0K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T0K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t0ka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1t0kb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t0k] [1t0k_D] [1t0k_A] [1t0k_C] [1t0k_B]
  • SWISS-PROT database: [P0AEX9] [P14120]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [MALE_ECOLI] [RL30_YEAST] by SWISSPFAM
  • Other resources with information on 1T0K
  • Community annotation for 1T0K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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