1T3V Structural Genomics, Unknown Function date Apr 27, 2004
title The Nmr Solution Structure Of Tm1816
authors L.Columbus, W.Peti, T.Herrmann, T.Etazady, H.Klock, S.Lesley, K.Wu Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm1816
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Ril(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-25b
methodSolution NMR
related structures by homologous chain: 1O13
Primary referenceNMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima., Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T, Wuthrich K, Proteins. 2005 Aug 15;60(3):552-7. PMID:15937903
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (705 Kb) [Save to disk]
  • Biological Unit Coordinates (1t3v.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 1T3V
  • Original NMR restraints for 1T3V from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1T3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T3V from S2C, [Save to disk]
    • View 1T3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1T3V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1T3V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t3va_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t3v] [1t3v_A]
  • SWISS-PROT database: [Q9X2D6]
  • Domain organization of [Q9X2D6_THEMA] by SWISSPFAM
    • Other resources with information on 1T3V
  • Community annotation for 1T3V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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