1T5D Ligase date May 04, 2004
title 4-Chlorobenzoyl-Coa Ligasesynthetase Bound To 4-Chlorobenzo
authors A.M.Gulick, X.Lu, D.Dunaway-Mariano
compound source
Molecule: 4-Chlorobenzoyl Coa Ligase
Chain: X
Ec: 6.2.1.33
Engineered: Yes
Organism_scientific: Alcaligenes Sp. Al3007
Organism_taxid: 206162
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasid
Expression_system_plasmid: Pqe70
symmetry Space Group: P 32 2 1
R_factor 0.178 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.979 124.979 69.001 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.21 Å
ligand 174, CA enzyme Ligase E.C.6.2.1.33 BRENDA
related structures by homologous chain: 1T5H
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceCrystal structure of 4-chlorobenzoate:CoA ligase/synthetase in the unliganded and aryl substrate-bound states., Gulick AM, Lu X, Dunaway-Mariano D, Biochemistry 2004 Jul 13;43(27):8670-9. PMID:15236575
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1t5d.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1T5D
  • CSU: Contacts of Structural Units for 1T5D
  • Likely Quarternary Molecular Structure file(s) for 1T5D
  • Structure Factors (225 Kb)
  • Retrieve 1T5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1T5D from S2C, [Save to disk]
  • Re-refined 1t5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1T5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1T5D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1T5D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t5dx_, region X [Jmol] [rasmolscript] [script source]
  • Fold representative 1t5d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1t5d_X] [1t5d]
  • SWISS-PROT database: [Q8GN86]
  • Domain organization of [Q8GN86_9BURK] by SWISSPFAM
  • Other resources with information on 1T5D
  • Community annotation for 1T5D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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