1TD5 Transcription date May 21, 2004
title Crystal Structure Of The Ligand Binding Domain Of E. Coli Iclr.
authors J.R.Walker, L.Evdokimova, R.G.Zhang, A.Bochkarev, A.Joachimiak, C.Arrowsmith, A.Edwards, A.Savchenko, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Acetate Operon Repressor
Chain: A, B, C, D
Fragment: Ligand Binding Domain
Synonym: Apc5050
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Iclr, B4018
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.098 82.911 157.316 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (1td5.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1td5.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (1td5.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (1td5.pdb4.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1TD5
  • CSU: Contacts of Structural Units for 1TD5
  • Likely Quarternary Molecular Structure file(s) for 1TD5
  • Retrieve 1TD5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TD5 from S2C, [Save to disk]
    • View 1TD5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TD5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TD5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1td5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1td5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1td5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1td5d_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1td5_C] [1td5] [1td5_D] [1td5_A] [1td5_B]
  • SWISS-PROT database: [P16528]
  • Domain organization of [ICLR_ECOLI] by SWISSPFAM
    • Other resources with information on 1TD5
  • Community annotation for 1TD5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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