1TD9 Crystal Structure of a Phosphotransacetylase from Bacillus subtilis date
authors Xu, Q.S., Jancarik, J., Yokota, H., Kim, R., Kim, S.H., BSGC, Berkeley.Structural.Genomics.Center.
compound source
symmetry
R_factor
R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
ligand SO4 enzyme
related structures by homologous chain: 1XCO
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate., Xu QS, Jancarik J, Lou Y, Kuznetsova K, Yakunin AF, Yokota H, Adams P, Kim R, Kim SH, J Struct Funct Genomics. 2005 Nov 9;:1-11. PMID:16283428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (1td9.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (1td9.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (1td9.pdb3.gz) 102 Kb
  • Biological Unit Coordinates (1td9.pdb4.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 1TD9
  • CSU: Contacts of Structural Units for 1TD9
  • Likely Quarternary Molecular Structure file(s) for 1TD9
  • Structure Factors (574 Kb)
  • Retrieve 1TD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TD9 from S2C, [Save to disk]
  • Re-refined 1td9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TD9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TD9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1td9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1td9b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1td9c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1td9d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1td9e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1td9f_, region F [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1td9_D] [1td9_E] [1td9_F] [1td9_B] [1td9_C] [1td9_A] [1td9]
  • SWISS-PROT database: [P39646]
  • Domain organization of [PTA_BACSU] by SWISSPFAM
    • Other resources with information on 1TD9
  • Community annotation for 1TD9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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