1TEV Transferase date May 25, 2004
title Crystal Structure Of The Human Umpcmp Kinase In Open Confor
authors D.Segura-Pena, N.Sekulic, S.Ort, M.Konrad, A.Lavie
compound source
Molecule: Ump-Cmp Kinase
Chain: A
Synonym: Cytidylate Kinase, Deoxycytidylate Kinase, Cytidin Monophosphate Kinase, Humpk;
Ec: 2.7.4.14
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Uck
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Rb
symmetry Space Group: P 65 2 2
R_factor 0.216 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.750 62.750 226.310 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand SO4 enzyme Transferase E.C.2.7.4.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytidylate kinase activity
  • uridine kinase activity
  • uridylate kinase activity
  • UMP kinase activity


  • Primary referenceSubstrate-induced Conformational Changes in Human UMP/CMP Kinase., Segura-Pena D, Sekulic N, Ort S, Konrad M, Lavie A, J Biol Chem 2004 Aug 6;279(32):33882-9. Epub 2004 May 26. PMID:15163660
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1tev.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1TEV
  • CSU: Contacts of Structural Units for 1TEV
  • Likely Quarternary Molecular Structure file(s) for 1TEV
  • Structure Factors (155 Kb)
  • Retrieve 1TEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TEV from S2C, [Save to disk]
  • Re-refined 1tev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TEV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TEV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1teva_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tev_A] [1tev]
  • SWISS-PROT database: [P30085]
  • Domain organization of [KCY_HUMAN] by SWISSPFAM
  • Other resources with information on 1TEV
  • Community annotation for 1TEV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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