1TFP Transport (Thyroxine) date Jan 05, 1996
title Transthyretin (Formerly Known As Prealbumin)
authors M.Sunde, S.J.Richardson, L.Chang, T.M.Pettersson, G.Schreiber, C.
compound source
Molecule: Transthyretin
Chain: A, B
Synonym: Prealbumin
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Serum
symmetry Space Group: P 65 2 2
R_factor 0.199 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.660 77.660 161.041 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
ligand SO4 enzyme
related structures by homologous chain: 1ICT, 5TTR
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceThe crystal structure of transthyretin from chicken., Sunde M, Richardson SJ, Chang L, Pettersson TM, Schreiber G, Blake CC, Eur J Biochem 1996 Mar 1;236(2):491-9. PMID:8612621
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1tfp.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (1tfp.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1TFP
  • CSU: Contacts of Structural Units for 1TFP
  • Likely Quarternary Molecular Structure file(s) for 1TFP
  • Structure Factors (88 Kb)
  • Retrieve 1TFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TFP from S2C, [Save to disk]
  • Re-refined 1tfp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TFP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TFP, from MSDmotif at EBI
  • Genome occurence of 1TFP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tfpa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1tfpb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tfp_A] [1tfp_B] [1tfp]
  • SWISS-PROT database: [P27731]
  • Domain organization of [TTHY_CHICK] by SWISSPFAM
  • Domain found in 1TFP: [TR_THY ] by SMART
    • Other resources with information on 1TFP
  • Community annotation for 1TFP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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